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pmparser 1.0.10

CRAN release: 2022-04-27

pmparser 1.0.9

  • Clarified error message when downloading PubMed files.
  • Skip testing of file downloads on CRAN.

pmparser 1.0.8

  • Increased timeout for downloading citation file.
  • Reordered steps to check citation table even if other tables are up-to-date.
  • Update to match lab style standard.

pmparser 1.0.7

pmparser 1.0.6

  • Updated styling based on linter.

pmparser 1.0.5

  • Added abstract_pos column to abstract table.
  • If pub_year in journal table is empty, now extracts pub_year from medline_date.

pmparser 1.0.4

CRAN release: 2022-02-17

  • Updated test standards for latest PubMed XML files.
  • Returned to doParallel in scripts for simplicity.

pmparser 1.0.3

  • Simplified xml2 dependency, since new version is now on CRAN.

pmparser 1.0.2

  • Fixed windows compatibility.

pmparser 1.0.1

  • Revised code to not need globalVariables() in order to pass R CMD check without notes.

pmparser 1.0.0

  • Updated tests.

pmparser 0.0.0.9036

  • Added data dictionary as a vignette and a table in the database.

pmparser 0.0.0.9035

  • Remove rare, obnoxious unicode character from keyword name.

pmparser 0.0.0.9034

  • Explicitly set doFuture chunking for all dopar loops.

pmparser 0.0.0.9033

  • Suppress irrelevant warnings from future.

pmparser 0.0.0.9032

  • %dopar% loops in other places now work with doFuture.

pmparser 0.0.0.9031

  • %dopar% loops in getPubmedFiles() now work with doFuture.
  • Use updated version of withr on CRAN.

pmparser 0.0.0.9030

  • Renamed internal functions for consistency and clarity.

pmparser 0.0.0.9029

  • getCitation() now uses data.table::fread() to write table in chunks, ~3.3x faster.
  • Switched from dbAppendTable() to dbWriteTable(..., append = TRUE) for inexplicable speed increase.

pmparser 0.0.0.9028

  • getCitation() now uses vroom for arkdb::unark().
  • Moved DBI driver packages to Suggests to reduce dependencies.

pmparser 0.0.0.9027

  • Removed obsolete copyright column from the abstract table.

pmparser 0.0.0.9026

  • parseMesh() now returns an additional table containing the IndexingMethod attribute.

pmparser 0.0.0.9025

  • Fixed rare case of a parsing function returning a data.table with NA in columns instead of a data.table with no rows.

pmparser 0.0.0.9024

  • Switched to using glue under the hood.